Journal Publications
2024
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Guan M, Deliberto TJ, Feng A, Zhang J, Li T, Wang S, Li L, Killian ML, Praena B, Giri E, Deliberto ST, Hang J, Olivier A, Torchetti MK, Tao YJ, Parrish C, Wan XF.
Neu5Gc binding loss of subtype H7 influenza A virus facilitates adaptation to gallinaceous poultry following transmission from waterbirds.
Journal of Virology, Accepted
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Ducatez MF, Wang C, Yang J, Zhao Y, Foret-Lucas C, Croville G, Loupias J, Teillaud A, Peralta B, Ghram A, Guérin JL, Wan XF
Infection dynamics of subtype H9N2 low pathogenic avian influenza a virus in turkeys.
Virology. 2024 Aug;596:110124. doi: 10.1016/j.virol.2024.110124. Epub 2024 May 28. PMID: 38838475.
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Tang CY, Gao C, Prasai K, Li T, Dash S, McElroy JA, Hang J, Wan XF.
Prediction models for COVID-19 disease outcomes.
Emerg Microbes Infect. 2024 Dec;13(1):2361791. doi: 10.1080/22221751.2024.2361791. Epub 2024 Jun 14. PMID: 38828796; PMCID: PMC11182058.
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Gao C, Wen F, Guan M, Hatuwal B, Li L, Praena B, Tang CY, Zhang J, Luo F,Xie H, Webby R, Tao YJ, Wan XF
MAIVeSS: streamlined selection of antigenically matched, high-yield viruses for seasonal influenza vaccine production.
Nature Communications volume 15, Article number: 1128 (2024)
2023
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Tang CY, Li T, Haynes T, McElroy JA, Ritter D, Hammer R, Sampson C, Webby R, Hang J, Wan XF
Rural populations facilitated early SARS-CoV-2 evolution and transmission in Missouri, USA.
Npj Viruses. 2023;1:7. doi: 10.1038/s44298-023-00005-1. Epub 2023 Dec 5. PMID: 38186942; PMCID: PMC10769004.
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Weston K, Bullock L, Hsu A, Wan XF, Burnam-Cole M, Everett K, McElroy JA
Maternal COVID vaccination and breastfeeding during a pandemic: Habitus and health behavior decision making.
Public Health Nurs. 2023 Sep-Oct;40(5):750-757. doi: 10.1111/phn.13221. Epub 2023 Jun 25. PMID: 37357425.
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Muhsin SA, He Y, Al-Amidie M, Sergovia K, Abdullah A, Wang Y, Alkorjia O, Hulsey RA, Hunter GL, Erdal ZK, Pletka RJ, George HS, Wan XF, Almasri M.
A microfluidic biosensor architecture for the rapid detection of COVID-19.
Analytica Chimica Acta. 2023 Sep 22;1275:341378. doi: 10.1016/j.aca.2023.341378. Epub 2023 Jun 9. PMCID: PMC10251744 PMID: 37524456.
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Feng A, Bevins S, Chandler J, DeLiberto TJ, Ghai R, Lantz K, Lenoch J, Retchless A, Shriner S, Tang CY, Tong SS, Torchetti M, Uehara A, Wan XF.
Transmission of SARS-CoV-2 in free-ranging white-tailed deer in the United States.
Nature Communication. 2023 Jul 10;14(1):4078. doi: 10.1038/s41467-023-39782-x. PMCID: PMC10333304 PMID: 37429851.
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Weston K, Bullock L, Hsu AL, Wan XH, Burnam-Cole M, Everett KD, McElroy JA.
Maternal COVID vaccination and breastfeeding during a pandemic: Habitus and health behavior decision making.
Public Health Nurs. 2023 Jun 25. doi: 10.1111/phn.13221. PMID: 37357425.
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Wang Y, Lenoch J, Kohler D, DeLiberto TJ, Tang CY, Li T, Tao YJ, Guan M, Compton S, Zeiss C, Hang J, Wan XF.
SARS-CoV-2 Exposure in Norway Rats (Rattus norvegicus) from New York City.
American Society for Microbiology. 2023 Apr 25;14(2):e0362122. doi: 10.1128/mbio.03621-22. Epub 2023 Mar 9. PMCID: PMC10127689 PMID: 36892291.
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Feng A, Akter S, Leigh SA, Wang H, Pharr GT, Evans J, Branton SL, Landinez MP, Pace L, Wan XF.
Genomic diversity, pathogenicity and antimicrobial resistance of Escherichia coli isolated from poultry in the southern United States.
BMC Microbiol. 2023 Jan 16;23(1):15. doi: 10.1186/s12866-022-02721-9. PMID: 36647025; PMCID: PMC9841705.
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Wong TL, Mooney BP, Cavallero GJ, Guan M, Li L, Zaia J, Wan XF.
Glycoproteomic Analyses of Influenza A Viruses Using timsTOF Pro MS.
J Proteome Res. 2023 Jan 6;22(1):62-77. doi: 10.1021/acs.jproteome.2c00469. Epub 2022 Dec 8. PMID: 36480915.
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Gass JD Jr, Dusek RJ, Hall JS, Hallgrimsson GT, Halldórsson HP, Vignisson SR, Ragnarsdottir SB, Jónsson JE, Krauss S, Wong SS, Wan XF, Akter S, Sreevatsan S, Trovão NS, Nutter FB, Runstadler JA, Hill NJ
Global dissemination of influenza A virus is driven by wild bird migration through arctic and subarctic zones.
Molecular Ecology. 2023 Jan;32(1):198-213. doi: 10.1111/mec.16738. Epub 2022 Oct 26. PMCID: PMC9797457 PMID: 36239465.
2022
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Tang CY, Boftsi M, Staudt L, McElroy JA, Li T, Duong S, Ohler A, Ritter D, Hammer R, Hang J, Wan XF.
SARS-CoV-2 and influenza co-infection: A cross-sectional study in central Missouri during the 2021-2022 influenza season.
Virology. 2022 Nov;576:105-110. doi: 10.1016/j.virol.2022.09.009. Epub 2022 Sep 30. PMCID: PMC9523501 PMID: 36206606.
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Guan M, Olivier AK, Lu X, Epperson W, Zhang X, Zhong L, Waters K, Mamaliger N, Li L, Wen F, Tao YJ, DeLiberto TJ, Wan XF.
The Sialyl Lewis X Glycan Receptor Facilitates Infection of Subtype H7 Avian Influenza A Viruses.
Journal of Virology. 2022 Oct 12;96(19):e0134422. doi: 10.1128/jvi.01344-22. Epub 2022 Sep 20. PMCID: PMC9555156 PMID: 36125302.
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Chang D, Klein J, Hackett W, Nalehua MR, Wan XF, Zaia J.
Improving statistical certainty of glycosylation similarity between influenza A virus variants using data-independent acquisition mass spectrometry.
Molecular and Cellular Proteomics. 2022 Sep 11:100412. doi: 10.1016/j.mcpro.2022.100412. Epub ahead of print. PMID: 36103992.
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Guan M, Jacobson O, Sarafianos G, Baroch J, Deliberto TJ, Wan XF.
Exposure of white-tailed deer in North America to influenza D virus.
Virology. 2022 Aug;573:111-117. doi: 10.1016/j.virol.2022.06.007. Epub 2022 Jun 17. PMID: 35751973.
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Praena B, Wan XF.
Influenza Virus Infections in Polarized Cells.
Viruses. 2022 Jun 15;14(6):1307. doi: 10.3390/v14061307. PMCID: PMC9231244 PMID: 35746778.
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Cao X, Wang S, Gadi MR, Liu D, Wang PG, Wan XF, Zhang J, Chen X, Pepi LE, Azadi P, Li L.
Systematic synthesis of bisected N-glycans and unique recognitions by glycan-binding proteins.
Chemical Science. 2022 Jun 9;13(25):7644-7656. doi: 10.1039/d1sc05435j. PMCID: PMC9241959 PMID: 35872821.
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Wang Y, Tang CY , Wan XF.
Antigenic characterization of influenza and SARS-CoV-2 viruses.
Analytical and Bioanalytical Chemistry. 2022 Apr;414(9):2841-2881. doi: 10.1007/s00216-021-03806-6. PMCID: PMC8669429 PMID: 34905077.
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Guan M, Johannesen E, Tang CY, Hsu AL, Barnes CL, Burnam M, McElroy JA, Wan XF.
Intrauterine Fetal Demise in the Third Trimester of Pregnancy Associated With Mild Infection With the SARS-CoV-2 Delta Variant Without Protection From Vaccination.
The Journal of Infectious Diseases. 2022 Mar 2;225(5):748-753. doi: 10.1093/infdis/jiac007. PMCID: PMC8807234 PMID: 35024853.
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Ramey AM, Hill NJ, Deliberto TJ, Gibbs SEJ, Hopkins MC, Lang AS, Poulson RL, Prosser DJ, Sleeman JM, Stallknecht DE, Wan XF.
Highly pathogenic avian influenza is an emerging disease threat to North American wildlife.
Journal of Wildlife Management, The Wildlife Society. 2022 Feb;86(2):e22171. doi: 10.1002/jwmg.22171.
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Hsu AL, Ohler AM, Goldstein A, Truong S, Tang CY, Wan XF, McElroy JA.
Coronavirus Disease 2019 (COVID-19) Disease Severity: Pregnant vs Nonpregnant Women at 82 Facilities.
Clinical Infectious Diseases. 2022 Feb 11;74(3):467-471. doi: 10.1093/cid/ciab441. PMID: 35148386.
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Robinson CA, Hsieh HY, Hsu SY, Wang Y, Salcedo BT, Belenchia A, Klutts J, Zemmer S, Reynolds M, Semkiw E, Foley T, Wan XF, Wieberg CG, Wenzel J, Lin CH, Johnson MC.
Defining Biological and Biophysical Properties of SARS-COV-2 Genetic Material in Wastewater.
Science of the Total Environment. 2022 Feb 10;807(Pt 1):150786. doi: 10.1016/j.scitotenv.2021.150786. Epub 2021 Oct 5. PMCID: PMC8490134 PMID: 34619200.
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Guan M, Blackmon S, Olivier AK, Zhang X, Liu L, Woolums A, Crenshaw MA, Liao SF, Webby R, Epperson W, Wan XF.
Time-Dependent Proinflammatory Responses Shape Virus Interference during Coinfections of Influenza A Virus and Influenza D Virus.
Viruses. 2022 Jan 24; 14(2):224. doi: 10.3390/v14020224. PMCID: PMC8878573 PMID: 35215819.
2021
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Waters K, Gao C, Ykema M, Han L, Voth L, Tao YJ, Wan XF.
Triple reassortment increases compatibility among viral ribonucleoprotein genes of contemporary avian and human influenza A viruses.
PLoS Pathogens. 2021 Oct 7;17(10):e1009962. doi: 10.1371/journal.ppat.1009962. PMCID: PMC8525756 PMID: 34618879.
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Tang CY, Segovia K, McElroy JA, Li T, Guan M, Zhang X, Misra S, Hang J, Wan XF.
Cell-Adapted Mutations and Antigenic Diversity of Influenza B Viruses in Missouri, 2019-2020 Season.
Viruses. 2021 Sep 22;13(10):1896. doi: 10.3390/v13101896. PMCID: PMC8538563 PMID: 34696325.
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Wan Z, Kan Q, Yan X, Zhao Z, Jin F, Shao H, Qin A, Deliberto TJ, Wan XF, Ye J.
Characterization of Subtype H6 Avian Influenza A Viruses Isolated From Wild Birds in Poyang Lake, China.
Frontiers in Veterinary Science. 2021 Sep 13;8:685399. doi: 10.3389/fvets.2021.685399. PMCID: PMC8473872 PMID: 34589532.
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Tang CY, Wang Y, McElroy JA, Li T, Hammer R, Ritter D, Lidl GM, Webby R, Hang J, Wan XF.
Reinfection of two genetically distinct SARS-CoV-2 viruses within 19 days.
Journal of Medical Virology. 2021 Oct;93(10):5700-5703. doi: 10.1002/jmv.27154. Epub 2021 Jul 5. PMCID: PMC8426799 PMID: 34170528.
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Liu D, Wang S, Xiao W, Miao CH, Konkle BA, Wan XF, Li L.
Site-Specific N-and O-Glycosylation Analysis of Human Plasma Fibronectin.
Frontiers in Chemistry. 2021 Jun 15;9:691217. doi: 10.3389/fchem.2021.691217. PMCID: PMC8239226 PMID: 34211961.
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Wang S, Chen C, Guan M, Liu D, Wan XF, Li L.
Terminal Epitope-Dependent Branch Preference of Siglecs Toward N-Glycans.
Frontiers in Molecular Biosciences. 2021 Apr 29;8:645999. doi: 10.3389/fmolb.2021.645999. PMCID: PMC8116747 PMID: 33996901.
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Hsu AL, Ohler AM, Goldstein A, Truong S, Tang CY, Wan XF, McElroy JA.
COVID-19 Disease Severity: Pregnant vs Nonpregnant Women at 82 Facilities.
Clinical Infectious Diseases. 2021 May 10;XX(XX):1-5. doi: 10.1093/cid/ciab441 .
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Wan XF, Tang CY, Ritter D, Wang Y, Li T, Segovia K, Kosikova M, Johnson M, Kwon HJ, Xie H, Hammer RD, McElroy JA, Hamid A, Collins ND, Hang J, Camp S.
SARS-CoV-2 show no infectivity at later stages in a prolonged COVID-19 patient despite positivity in RNA testing.
Journal of Medical Virology. 2021 Jul;93(7):4570-4575. doi: 10.1002/jmv.27001. Epub 2021 Apr 23. PMCID: PMC8250787 PMID: 33830520.
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Waters K, Wan HJ, Han L, Xue J, Ykema M, Tao YJ, Wan XF
Variations outside the conserved motifs of PB1 catalytic active site may affect replication efficiency of the RNP complex of influenza A virus.
Virology,Virology. 2021 Jul;559:145-155. doi: 10.1016/j.virol.2021.04.001. Epub 2021 Apr 9. PMCID: PMC8579824 PMID: 33887645.
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Li T, Chung HK,Pireku P, Beitzel B,Sanborn M,Tang C, Hammer R, Ritter D, Wan XF, Berry IM, Hang J.
Rapid High-Throughput Whole-Genome Sequencing of SARS-CoV-2 by Using One-Step Reverse Transcription-PCR Amplification with an Integrated Microfluidic System and Next-Generation Sequencing.
American Society for Microbiology, Journal of Clinical Microbiology. 2021 Apr 20;59(5):e02784-20. doi: 10.1128/JCM.02784-20. PMCID: PMC8091833 PMID: 33653700.
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Hsu AL, Guan M, Johannesen E, Stephens AJ, Khaleel N, Kagan N, Tuhlei BC, Wan XF.
Placental SARS-CoV-2 in a Pregnant Woman with Mild COVID-19 Disease
J Med Virol. 2021 Feb;93(2):1038-1044. doi: 10.1002/jmv.26386. Epub 2020 Nov 10. PMCID: PMC7436499 PMID: 32749712.
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Chela H, Pasha SB, Wan XF, Ghouri YA.
A Review on Medical Management of Inflammatory Bowel Diseases during the COVID-19 Pandemic.
J Gastroenterol Hepatol. 2021 Apr;36(4):918-926. doi: 10.1111/jgh.15241. Epub 2020 Sep 15. PMID: 32876952.
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Xie H, Xiang R, Wan HJ, Plant EP, Radvak P, Kosikova M, Li X, Zoueva O, Ye Z, Wan XF.
Reduced Influenza B-specific Post-Vaccination Antibody Cross-reactivity in the B/Victoria Lineage Predominant 2019/20 Season.
Clinical Infectious Diseases. 2021 Jun 1;72(11):e776-e783. doi: 10.1093/cid/ciaa1481. PMCID: PMC8315234 PMID: 32990724.
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Lee DH, Killian ML, Deliberto TJ, Wan XF, Lei L, Swayne DE, Torchetti MK.
H7N1 low pathogenicity avian influenza virus in poultry, United States, 2018.
Avian Diseases. 2021 Mar;65(1):59-62. doi: 10.1637/aviandiseases-D-20-00088. PMID: 34339123.
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Guan M, Johannesen E, Tang C, Hsu AL, Barnes CL, Burnam M, McElroy JA, Wan XF.
Intrauterine fetal demise in the third trimester of pregnancy associated with mild infection with the SARS-CoV-2 Delta variant without protection from vaccination.
Journal of Infectious Diseases, accepted.
2020
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Kim H, Seiler P, Jones JC, Ridout G, Camp KP, Fabrizio TP, Jeevan T, Miller LA, Throm RE, Ferrara F, Fredrickson RL, Lowe JF, Wang L, Odemuyiwa SO, Wan X-F, Webby RJ.
Antibody Responses to SARS-CoV-2 Antigens in Humans and Animals.
Vaccines (Basel). 2020 Nov 16;8(4):684. doi: 10.3390/vaccines8040684. PMCID: PMC7712576 PMID: 33207583.
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Criado MF, Sá E Silva M, Lee DH, de Lima Salge CA, Spackman E, Donis R, Wan XF, Swayne DE.
Cross-protection by inactivated H5 pre-pandemic vaccine seed strains against diverse Goose/Guangdong lineage H5N1 highly pathogenic avian influenza viruses.
J Virol. 2020 Nov 23;94(24):e00720-20. doi: 10.1128/JVI.00720-20. PMCID: PMC7925181 PMID: 32999029.
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Zhang X, Cunningham FL, Li L, Hanson-Dorr K, Liu L, Waters K, Guan M, Olivier AK, Schmit BS, Nolting JM, Bowman AS, Torchetti MK, DeLiberto TJ, Wan XF.
Tissue tropisms of avian influenza A viruses affect their spillovers from wild birds to pigs.
J Virol. 2020 Nov 23;94(24):e00847-20. doi: 10.1128/JVI.00847-20. PMCID: PMC7925198 PMID: 32967956
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Wang B, Wu H, Wan XF.
Transport and fate of human expiratory droplets—A modeling approach.
Phys Fluids (1994). 2020 Aug 1;32(8):083307. doi: 10.1063/5.0021280. PMCID: PMC7437951 PMID: 32831538.
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Lycett SJ, Pohlmann A, Staubach C, Caliendo V, Woolhouse M, Beer M, Kuiken T; Global Consortium for H5N8 and Related Influenza Viruses.
Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia.
Proc Natl Acad Sci U S A. 2020 Aug 25;117(34):20814-20825. doi: 10.1073/pnas.2001813117. Epub 2020 Aug 7. PMCID: PMC7456104 PMID: 32769208.
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Wan XF, Ferguson L, Oliva J, Rubrum A, Eckard L, Zhang X, Woolums AR, Lion A, Meyer G, Murakami S, Ma W, Horimoto T, Webby R, Ducatez MF, Epperson W.
Limited cross-protection provided by prior infection contributes to high prevalence of influenza D viruses in cattle.
J Virol. 2020 Aug 31;94(18):e00240-20. doi: 10.1128/JVI.00240-20. PMCID: PMC7459554 PMID: 32611750.
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Hu M, Yang G, DeBeauchamp J, Crumpton JC, Kim H, Li L, Wan XF, Kercher L, Bowman AS, Webster RG, Webby RJ, Russell CJ.
HA Stabilization Promotes Replication and Transmission of Swine H1N1 Gamma Influenza Viruses in Ferrets.
Elife. 2020 Jun 30;9:e56236. doi: 10.7554/eLife.56236. PMCID: PMC7326494 PMID: 32602461.
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Chang D, Hackett WE, Zhong L, Wan XF, Zaia J.
Measuring Site-Specific Glycosylation Similarity Between Influenza A Virus Variants With Statistical Certainty.
Mol Cell Proteomics. 2020 Sep;19(9):1533-1545. doi: 10.1074/mcp.RA120.002031. Epub 2020 Jun 29. PMCID: PMC8143645 PMID: 32601173.
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Liu P, Jiang JZ, Wan XF, Hua Y, Li L, Zhou J, Wang X, Hou F, Chen J, Zou J, Chen J.
Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?.
PLoS Pathog. 2020 May 14;16(5):e1008421. doi: 10.1371/journal.ppat.1008421. Erratum in: PLoS Pathog. 2021 Jun 9;17(6):e1009664. PMCID: PMC7224457 PMID: 32407364.
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Li L, Chang D, Han L, Zhang X, Zaia J, Wan XF.
Multi-Task Learning Sparse Group Lasso: a Method for Quantifying Antigenicity of Influenza A(H1N1) Virus using Mutations and Variations in Glycosylation of Hemagglutinin.
BMC Bioinformatics. 2020 May 11;21(1):182. doi: 10.1186/s12859-020-3527-5. PubMed PMID: 32393178; PubMed Central PMCID: PMC7216668.
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Ma C, Liu D, Li D, Zhang J, Xu XQ, Zhu H, Wan XF, Miao CH, Konkle BA, Onigman P, Xiao W, Li L.
Comprehensive N- And O-glycosylation Mapping of Human Coagulation Factor V.
J Thromb Haemost. 2020 Aug;18(8):1884-1892. doi: 10.1111/jth.14861. Epub 2020 Jun 14. PMCID: PMC7732234 PMID: 32310329.
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Wilber MQ, Webb CT, Cunningham FL, Pedersen K, Wan XF, Pepin KM.
Inferring seasonal infection risk at population and regional scales from serology samples.
Ecology. 2020 Jan;101(1):e02882. doi: 10.1002/ecy.2882. Epub 2019 Nov 19. PubMed PMID: 31506932; PubMed Central PMCID: PMC6940506.
2019
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Wan H, Gao J, Yang H, Yang S, Harvey R, Chen YQ, Zheng NY, Chang J, Carney PJ, Li X, Plant E, Jiang L, Couzens L, Wang C, Strohmeier S, Wu WW, Shen RF, Krammer F, Cipollo JF, Wilson PC, Stevens J, Wan XF, Eichelberger MC, Ye Z.
The Neuraminidase of A(H3N2) Influenza Viruses Circulating Since 2016 Is Antigenically Distinct From the A/Hong Kong/4801/2014 Vaccine Strain.
Nat Microbiol. 2019 Dec;4(12):2216-2225. doi: 10.1038/s41564-019-0522-6. Epub 2019 Aug 12. PubMed PMID: 31406333; PubMed Central PMCID: PMC6879794.
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Pepin KM, Pedersen K, Wan XF, Cunningham FL, Webb CT, Wilber MQ.
Individual-Level Antibody Dynamics Reveal Potential Drivers of Influenza A Seasonality in Wild Pig Populations.
Integr Comp Biol. 2019 Nov 1;59(5):1231-1242. doi: 10.1093/icb/icz118. PubMed PMID: 31251341; PubMed Central PMCID: PMC6863756.
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You, W., Z. Yang, G. Guo, X.-F. Wan, and G. Ji.
Prediction of DNA-binding proteins by interaction fusion feature representation and selective ensemble.
2019,Knowledge-based systems, 163: 598-610.
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Uher-Koch BD, Spivey TJ, Van Hemert CR, Schmutz JA, Jiang K, Wan XF, Ramey AM.
Serologic Evidence for Influenza A Virus Exposure in Three Loon Species Breeding in Alaska, USA
J Wildl Dis. 2019 Oct;55(4):862-867. Epub 2019 Mar 21. PubMed PMID: 30896365.
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Guan M, Hall JS, Zhang X, Dusek RJ, Olivier AK, Liu L, Li L, Krauss S, Danner A, Li T, Rutvisuttinunt W, Lin X, Hallgrimsson GT, Ragnarsdottir SB, Vignisson SR, TeSlaa J, Nashold SW, Jarman R, Wan XF.
Aerosol Transmission of Gull-Origin Iceland Subtype H10N7 Influenza A Virus in Ferrets
J Virol. 2019 Jul 1;93(13). doi: 10.1128/JVI.00282-19. Print 2019 Jul 1. PubMed PMID: 30996092; PubMed Central PMCID: PMC6580963.
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Wen F, Wan XF.
Influenza Neuraminidase: Underrated Role in Receptor Binding
Trends Microbiol. 2019 Jun;27(6):477-479. doi: 10.1016/j.tim.2019.03.001. Epub 2019 Mar 29. PubMed PMID: 30930001; PubMed Central PMCID: PMC6527465.
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Cunningham FL, Hanson-Dorr KC, Ford L, Middleton DR, Crain A, Durst L, Ware C, Griffin MJ, Mischke CC, Wan X, Hanson L.
Environmental factor(s) and animal vector(s) associated with atypical Aeromonas hydrophila abundance and dissemination among channel catfish ponds.
Journal of the World Aquaculture Society. 2019 April.
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Zhang X, Outlaw C, Olivier AK, Woolums A, Epperson W, Wan XF.
Pathogenesis of Co-Infections of Influenza D Virus and Mannheimia Haemolytica in Cattle
Vet Microbiol. 2019 Apr;231:246-253. doi: 10.1016/j.vetmic.2019.03.027. Epub 2019 Mar 25. PubMed PMID: 30955818; PubMed Central PMCID: PMC6542694.
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Hemert CV, Spivey TJ, Uher-Koch BD, Atwood TC, Sinnett DR, Meixell BW, Hupp JW, Jiang K, Adams LG, Gustine DD, Ramey AM, Wan XF.
SURVEY OF ARCTIC ALASKAN WILDLIFE FOR INFLUENZA A ANTIBODIES: LIMITED EVIDENCE FOR EXPOSURE OF MAMMALS
J Wildl Dis. 2019 Apr;55(2):387-398. doi: 10.7589/2018-05-128. Epub 2018 Oct 5. PubMed PMID: 30289331.
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Han L, Li L, Wen F, Zhong L, Zhang T, Wan XF.
Graph-guided Multi-Task Sparse Learning Model: A Method for Identifying Antigenic Variants of Influenza A(H3N2) Virus
Bioinformatics. 2019 Jan 1;35(1):77-87. doi: 10.1093/bioinformatics/bty457. PubMed PMID: 29878046; PubMed Central PMCID: PMC6298058.
2018
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Zhang X, Sun H, Cunningham FL, Li L, Hanson-Dorr K, Hopken MW, Cooley J, Long LP, Baroch JA, Li T, Schmit BS, Lin X, Olivier AK, Jarman RG, DeLiberto TJ, Wan XF.
Tissue Tropisms Opt for Transmissible Reassortants During Avian and Swine Influenza A Virus Co-Infection in Swine
PLoS Pathog. 2018 Dec;14(12):e1007417. doi: 10.1371/journal.ppat.1007417. eCollection 2018 Dec. PubMed PMID: 30507946; PubMed Central PMCID: PMC6292640.
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Li L, DeLiberto TJ, Killian ML, Torchetti MK, Wan XF.
Evolutionary Pathway for the 2017 Emergence of a Novel Highly Pathogenic Avian Influenza A(H7N9) Virus among Domestic Poultry in Tennessee, United States
Virology. 2018 Dec;525:32-39. doi: 10.1016/j.virol.2018.09.003. Epub 2018 Sep 17. PubMed PMID: 30236990; PubMed Central PMCID: PMC6269200.
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Kosikova M, Li L, Radvak P, Ye Z, Wan XF, Xie H.
Imprinting of Repeated Influenza A/H3 Exposures on Antibody Quantity and Antibody Quality: Implications for Seasonal Vaccine Strain Selection and Vaccine Performance
Clin Infect Dis. 2018 Oct 30;67(10):1523-1532. doi: 10.1093/cid/ciy327. PubMed PMID: 29672713; PubMed Central PMCID: PMC6206119.
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Li L, Bowman AS, DeLiberto TJ, Killian ML, Krauss S, Nolting JM, Torchetti MK, Ramey AM, Reeves AB, Stallknecht DE, Webby RJ, Wan XF.
Genetic Evidence Supports Sporadic and Independent Introductions of Subtype H5 Low-Pathogenic Avian Influenza A Viruses From Wild Birds to Domestic Poultry in North America
J Virol. 2018 Oct 1;92(19). doi: 10.1128/JVI.00913-18. Print 2018 Oct 1. PubMed PMID: 30045988; PubMed Central PMCID: PMC6146819.
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Wen F, Blackmon S, Olivier AK, Li L, Guan M, Sun H, Wang PG, Wan XF.
Mutation W222L at the Receptor Binding Site of Hemagglutinin Could Facilitate Viral Adaption From Equine Influenza A(H3N8) Virus to Dogs
J Virol. 2018 Sep 15;92(18). doi: 10.1128/JVI.01115-18. Print 2018 Sep 15. PubMed PMID: 29997206; PubMed Central PMCID: PMC6146684.
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Ferguson L, Luo K, Olivier AK, Cunningham FL, Blackmon S, Hanson-Dorr K, Sun H, Baroch J, Lutman MW, Quade B, Epperson W, Webby R, DeLiberto TJ, Wan XF.
Influenza D Virus Infection in Feral Swine Populations, United States
Emerg Infect Dis. 2018 Jun;24(6):1020-1028. doi: 10.3201/eid2406.172102. PubMed PMID: 29774857; PubMed Central PMCID: PMC6004836.
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Wen F, Li L, Zhao N, Chiang MJ, Xie H, Cooley J, Webby R, Wang PG, Wan XF.
A Y161F Hemagglutinin Substitution Increases Thermostability and Improves Yields of 2009 H1N1 Influenza A Virus in Cells
J Virol. 2018 Jan 15;92(2). doi: 10.1128/JVI.01621-17. Print 2018 Jan 15. PubMed PMID: 29118117; PubMed Central PMCID: PMC5752953.
2017
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Sun H, Blackmon S, Yang G, Waters K, Li T, Tangwangvivat R, Xu Y, Shyu D, Wen F, Cooley J, Senter L, Lin X, Jarman R, Hanson L, Webby R, Wan XF.
Zoonotic Risk, Pathogenesis, and Transmission of Avian-Origin H3N2 Canine Influenza Virus
J Virol. 2017 Nov 1;91(21). doi: 10.1128/JVI.00637-17. Print 2017 Nov 1. PubMed PMID: 28814512; PubMed Central PMCID: PMC5640866.
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Wu Z, Liu Y, Li L, Wan XF, Zhu H, Guo Y, Wei M, Guan W, Wang PG.
Decoding Glycan Protein Interactions by a New Class of Asymmetric N-glycans
Org Biomol Chem. 2017 Oct 31;15(42):8946-8951. doi: 10.1039/c7ob02303k. PubMed PMID: 29043371; PubMed Central PMCID: PMC5971091.
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Martin BE, Sun H, Carrel M, Cunningham FL, Baroch JA, Hanson-Dorr KC, Young SG, Schmit B, Nolting JM, Yoon KJ, Lutman MW, Pedersen K, Lager K, Bowman AS, Slemons RD, Smith DR, DeLiberto T, Wan XF.
Feral Swine in the United States Have Been Exposed to Both Avian and Swine Influenza A Viruses
Appl Environ Microbiol. 2017 Oct 1;83(19). doi: 10.1128/AEM.01346-17. Print 2017 Oct 1. PubMed PMID: 28733290; PubMed Central PMCID: PMC5601342.
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Xie H, Li L, Ye Z, Li X, Plant EP, Zoueva O, Zhao Y, Jing X, Lin Z, Kawano T, Chiang MJ, Finch CL, Kosikova M, Zhang A, Zhu Y, Wan XF.
Differential Effects of Prior Influenza Exposures on H3N2 Cross-reactivity of Human Postvaccination Sera
Clin Infect Dis. 2017 Jul 15;65(2):259-267. doi: 10.1093/cid/cix269. PubMed PMID: 28369230; PubMed Central PMCID: PMC5850569.
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Xu Y, Ramey AM, Bowman AS, DeLiberto TJ, Killian ML, Krauss S, Nolting JM, Torchetti MK, Reeves AB, Webby RJ, Stallknecht DE, Wan XF.
Low-Pathogenic Influenza A Viruses in North American Diving Ducks Contribute to the Emergence of a Novel Highly Pathogenic Influenza A(H7N8) Virus
J Virol. 2017 May 1;91(9). doi: 10.1128/JVI.02208-16. Print 2017 May 1. PubMed PMID: 28202755; PubMed Central PMCID: PMC5391441.
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Sun H, Kaplan BS, Guan M, Zhang G, Ye J, Long LP, Blackmon S, Yang CK, Chiang MJ, Xie H, Zhao N, Cooley J, Smith DF, Liao M, Cardona C, Li L, Wang GP, Webby R, Wan XF.
Pathogenicity and Transmission of a Swine Influenza A(H6N6) Virus
Emerg Microbes Infect. 2017 Apr 12;6(4):e17. doi: 10.1038/emi.2017.3. PubMed PMID: 28400591; PubMed Central PMCID: PMC5457681.
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Martin BE, Bowman AS, Li L, Nolting JM, Smith DR, Hanson LA, Wan XF.
Detection of Antigenic Variants of Subtype H3 Swine Influenza A Viruses From Clinical Samples
J Clin Microbiol. 2017 Apr;55(4):1037-1045. doi: 10.1128/JCM.02049-16. Epub 2017 Jan 11. PubMed PMID: 28077698; PubMed Central PMCID: PMC5377830.
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Krishnavajhala A, Muire PJ, Hanson L, Wan H, McCarthy F, Zhao A, Petrie-Hanson L.
Transcriptome Changes Associated with Protective Immunity in T and B Cell-Deficient Rag1-/- Mutant Zebrafish. International Journal of Immunology.
2017 April; 5(2):20-36. doi: 10.11648/j.iji.20170502.11.
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Wang C, Liu H, Luo J, Chen L, Li M, Su W, Zhao N, Liu S, Xie L, Jia Y, Ding H, Wan X, He H.
HA Triggers the Switch From MEK1 SUMOylation to Phosphorylation of the ERK Pathway in Influenza A Virus-Infected Cells and Facilitates Its Infection
Front Cell Infect Microbiol. 2017;7:27. doi: 10.3389/fcimb.2017.00027. eCollection 2017. PubMed PMID: 28224114; PubMed Central PMCID: PMC5293797.
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Luo J, Ferguson L, Smith DR, Woolums AR, Epperson WB, Wan XF.
Serological Evidence for High Prevalence of Influenza D Viruses in Cattle, Nebraska, United States, 2003-2004
Virology. 2017 Jan 15;501:88-91. doi: 10.1016/j.virol.2016.11.004. Epub 2016 Nov 23. PubMed PMID: 27888742; PubMed Central PMCID: PMC5201436.
2016
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Sun H, Xue JL, Bailey E, Xu Y, Hu G, Baroch J, Zhang Y, Pace L, DeLiberto TJ, Wan XF.
A Quantitative RT-PCR Assay for Rapid Detection of Eurasian-lineage H10 Subtype Influenza A Virus
Virol Sin. 2016 Oct;31(5):444-447. doi: 10.1007/s12250-016-3826-1. PubMed PMID: 27699612; PubMed Central PMCID: PMC5440173.
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Han L, Zhang Y, Zhang T.
Fast Component Pursuit for Large-Scale Inverse Covariance Estimation
KDD. 2016 Aug;2016:1585-1594. doi: 10.1145/2939672.2939851. PubMed PMID: 28580192; PubMed Central PMCID: PMC5455800.
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Han L, Zhang Y, Wan XF, Zhang T.
Generalized Hierarchical Sparse Model for Arbitrary-Order Interactive Antigenic Sites Identification in Flu Virus Data
KDD. 2016 Aug;2016:865-874. doi: 10.1145/2939672.2939786. PubMed PMID: 28392970; PubMed Central PMCID: PMC5382970.
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Ferguson L, Olivier AK, Genova S, Epperson WB, Smith DR, Schneider L, Barton K, McCuan K, Webby RJ, Wan XF.
Pathogenesis of Influenza D Virus in Cattle
J Virol. 2016 Jun 15;90(12):5636-5642. doi: 10.1128/JVI.03122-15. Print 2016 Jun 15. PubMed PMID: 27030270; PubMed Central PMCID: PMC4886773.
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Bailey E, Long LP, Zhao N, Hall JS, Baroch JA, Nolting J, Senter L, Cunningham FL, Pharr GT, Hanson L, Slemons R, DeLiberto TJ, Wan XF.
Antigenic Characterization of H3 Subtypes of Avian Influenza A Viruses From North America
Avian Dis. 2016 May;60(1 Suppl):346-53. doi: 10.1637/11086-041015-RegR. PubMed PMID: 27309078; PubMed Central PMCID: PMC4911812.
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Li Y, Huang XM, Zhao DM, Liu YZ, He KW, Liu YX, Chen CH, Long LP, Xu Y, Xie XX, Han KK, Liu XY, Yang J, Zhang YF, Fan F, Webby R, Wan XF.
Detection of Avian H7N9 Influenza A Viruses in the Yangtze Delta Region of China During Early H7N9 Outbreaks
Avian Dis. 2016 May;60(1 Suppl):118-25. doi: 10.1637/11098-042015-Reg. PubMed PMID: 27309047; PubMed Central PMCID: PMC4911810.
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Xu Y, Bailey E, Spackman E, Li T, Wang H, Long LP, Baroch JA, Cunningham FL, Lin X, Jarman RG, DeLiberto TJ, Wan XF.
Limited Antigenic Diversity in Contemporary H7 Avian-Origin Influenza A Viruses From North America
Sci Rep. 2016 Feb 9;6:20688. doi: 10.1038/srep20688. PubMed PMID: 26858078; PubMed Central PMCID: PMC4746648.
2015
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Ferguson L, Eckard L, Epperson WB, Long LP, Smith D, Huston C, Genova S, Webby R, Wan XF.
Influenza D Virus Infection in Mississippi Beef Cattle
Virology. 2015 Dec;486:28-34. doi: 10.1016/j.virol.2015.08.030. Epub 2015 Sep 18. PubMed PMID: 26386554; PubMed Central PMCID: PMC4710178.
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Zhao N, Martin BE, Yang CK, Luo F, Wan XF.
Association Analyses of Large-Scale Glycan Microarray Data Reveal Novel Host-Specific Substructures in Influenza A Virus Binding Glycans
Sci Rep. 2015 Oct 28;5:15778. doi: 10.1038/srep15778. PubMed PMID: 26508590; PubMed Central PMCID: PMC4623813.
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Xie H, Wan XF, Ye Z, Plant EP, Zhao Y, Xu Y, Li X, Finch C, Zhao N, Kawano T, Zoueva O, Chiang MJ, Jing X, Lin Z, Zhang A, Zhu Y.
H3N2 Mismatch of 2014-15 Northern Hemisphere Influenza Vaccines and Head-to-head Comparison Between Human and Ferret Antisera Derived Antigenic Maps
Sci Rep. 2015 Oct 16;5:15279. doi: 10.1038/srep15279. PubMed PMID: 26472175; PubMed Central PMCID: PMC4607887.
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Su W, Wang C, Luo J, Zhao Y, Wu Y, Chen L, Zhao N, Li M, Xing C, Liu H, Zhang H, Chang YF, Li T, Ding H, Wan X, He H.
Testing the Effect of Internal Genes Derived From a Wild-Bird-Origin H9N2 Influenza A Virus on the Pathogenicity of an A/H7N9 Virus
Cell Rep. 2015 Sep 22;12(11):1831-41. doi: 10.1016/j.celrep.2015.08.029. Epub 2015 Sep 3. PubMed PMID: 26344762.
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Sun H, Cunningham FL, Harris J, Xu Y, Long LP, Hanson-Dorr K, Baroch JA, Fioranelli P, Lutman MW, Li T, Pedersen K, Schmit BS, Cooley J, Lin X, Jarman RG, DeLiberto TJ, Wan XF.
Dynamics of Virus Shedding and Antibody Responses in Influenza A Virus-Infected Feral Swine
J Gen Virol. 2015 Sep;96(9):2569-2578. doi: 10.1099/jgv.0.000225. Epub 2015 Jun 25. PubMed PMID: 26297148; PubMed Central PMCID: PMC4857451.
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Ampofo WK, Azziz-Baumgartner E, Bashir U, Cox NJ, Fasce R, Giovanni M, Grohmann G, Huang S, Katz J, Mironenko A, Mokhtari-Azad T, Sasono PM, Rahman M, Sawanpanyalert P, Siqueira M, Waddell AL, Waiboci L, Wood J, Zhang W, Ziegler T.
Strengthening the Influenza Vaccine Virus Selection and Development Process: Report of the 3rd WHO Informal Consultation for Improving Influenza Vaccine Virus Selection Held at WHO Headquarters, Geneva, Switzerland, 1-3 April 2014
Vaccine. 2015 Aug 26;33(36):4368-82. doi: 10.1016/j.vaccine.2015.06.090. Epub 2015 Jul 3. PubMed PMID: 26148877.
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Ye J, Wen F, Xu Y, Zhao N, Long L, Sun H, Yang J, Cooley J, Todd Pharr G, Webby R, Wan XF.
Error-prone Pcr-Based Mutagenesis Strategy for Rapidly Generating High-Yield Influenza Vaccine Candidates
Virology. 2015 Aug;482:234-43. doi: 10.1016/j.virol.2015.03.051. Epub 2015 Apr 17. PubMed PMID: 25899178; PubMed Central PMCID: PMC4461506.
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Kumar S, Driskell EA, Cooley AJ, Jia K, Blackmon S, Wan XF, Uhl EW, Saliki JT, Sanchez S, Krimer PM, Hogan RJ.
Fatal Canid Herpesvirus 1 Respiratory Infections in 4 Clinically Healthy Adult Dogs
Vet Pathol. 2015 Jul;52(4):681-7. doi: 10.1177/0300985814556190. Epub 2014 Oct 30. PubMed PMID: 25358536.
2014
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Xu Y, Cao H, Liu H, Sun H, Martin B, Zhao Y, Wang Q, Deng G, Xue J, Zong Y, Zhu J, Wen F, Long LP, Wong SS, Zhao N, Fu X, Liao M, Hu G, Webby R, Gao GF, Wan XF.
Identification of the Source of A (H10N8) Virus Causing Human Infection.
Infect Genet Evol. 2015 Mar;30:159-163. doi: 10.1016/j.meegid.2014.12.026. Epub 2014 Dec 27. PubMed PMID: 25550151; PubMed Central PMCID: PMC4838479.
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Martin BE, Jia K, Sun H, Ye J, Hall C, Ware D, Wan XF.
Detection of Influenza Antigenic Variants Directly From Clinical Samples Using Polyclonal Antibody Based Proximity Ligation Assays.
Virology. 2015 Feb;476:151-158. doi: 10.1016/j.virol.2014.11.029. Epub 2014 Dec 26. PubMed PMID: 25546251; PubMed Central PMCID: PMC4902327.
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Spackman E, Swayne DE, Pantin-Jackwood MJ, Wan XF, Torchetti MK, Hassan M, Suarez DL, Sá e Silva M.
Variation in Protection of Four Divergent Avian Influenza Virus Vaccine Seed Strains Against Eight Clade 2.2.1 and 2.2.1.1. Egyptian H5N1 High Pathogenicity Variants in Poultry
Influenza Other Respir Viruses. 2014 Nov;8(6):654-62. doi: 10.1111/irv.12290. Epub 2014 Oct 3. PubMed PMID: 25277652; PubMed Central PMCID: PMC4262281.
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Feng ZX, Bai Y, Yao JT, Pharr GT, Wan XF, Xiao SB, Chi LZ, Gan Y, Wang HY, Wei YN, Liu MJ, Xiong QY, Bai FF, Li B, Wu XS, Shao GQ.
Use of Serological and Mucosal Immune Responses to Mycoplasma Hyopneumoniae Antigens P97R1, P46 and P36 in the Diagnosis of Infection.
Vet J. 2014 Oct;202(1):128-33. doi: 10.1016/j.tvjl.2014.06.019. Epub 2014 Jul 1. PubMed PMID: 25066030.
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Yang J, Zhang T, Wan XF.
Sequence-based Antigenic Change Prediction by a Sparse Learning Method Incorporating Co-Evolutionary Information.
PLoS One. 2014;9(9):e106660. doi: 10.1371/journal.pone.0106660. eCollection 2014. PubMed PMID: 25188236; PubMed Central PMCID: PMC4154722.
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Spackman E, Wan XF, Kapczynski D, Xu Y, Pantin-Jackwood M, Suarez DL, Swayne D.
Potency, Efficacy, and Antigenic Mapping of H7 Avian Influenza Virus Vaccines Against the 2012 H7N3 Highly Pathogenic Avian Influenza Virus From Mexico
Avian Dis. 2014 Sep;58(3):359-66. doi: 10.1637/10751-121913-Reg.1. PubMed PMID: 25518428.
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Feng Z, Baroch JA, Long LP, Xu Y, Cunningham FL, Pedersen K, Lutman MW, Schmit BS, Bowman AS, Deliberto TJ, Wan XF.
Influenza A Subtype H3 Viruses in Feral Swine, United States, 2011-2012.
Emerg Infect Dis. 2014 May;20(5):843-6. doi: 10.3201/eid2005.131578. PubMed PMID: 24751326; PubMed Central PMCID: PMC4012812.
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Beato MS, Xu Y, Long LP, Capua I, Wan XF.
Antigenic and Genetic Evolution of Low-Pathogenicity Avian Influenza Viruses of Subtype H7N3 Following Heterologous Vaccination.
Clin Vaccine Immunol. 2014 May;21(5):603-12. doi: 10.1128/CVI.00647-13. Epub 2014 Feb 19. PubMed PMID: 24554694; PubMed Central PMCID: PMC4018894.
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Yang J, Grünewald S, Xu Y, Wan XF.
Quartet-based Methods to Reconstruct Phylogenetic Networks.
BMC Syst Biol. 2014 Feb 20;8:21. doi: 10.1186/1752-0509-8-21. PubMed PMID: 24555518; PubMed Central PMCID: PMC3941989.
2013
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Feng ZX, Wei YN, Li GL, Lu XM, Wan XF, Pharr GT, Wang ZW, Kong M, Gan Y, Bai FF, Liu MJ, Xiong QY, Wu XS, Shao GQ.
Development and Validation of an Attenuated Mycoplasma Hyopneumoniae Aerosol Vaccine.
Vet Microbiol. 2013 Dec 27;167(3-4):417-24. doi: 10.1016/j.vetmic.2013.08.012. Epub 2013 Aug 28. PubMed PMID: 24035264.
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Yang G, Li S, Blackmon S, Ye J, Bradley KC, Cooley J, Smith D, Hanson L, Cardona C, Steinhauer DA, Webby R, Liao M, Wan XF.
Mutation Tryptophan to Leucine at Position 222 of Haemagglutinin Could Facilitate H3N2 Influenza A Virus Infection in Dogs.
J Gen Virol. 2013 Dec;94(Pt 12):2599-2608. doi: 10.1099/vir.0.054692-0. Epub 2013 Sep 1. PubMed PMID: 23994833; PubMed Central PMCID: PMC4093785.
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Wan XF, Carrel M, Long LP, Alker AP, Emch M.
Perspective on Emergence and Re-Emergence of Amantadine Resistant Influenza A Viruses in Domestic Animals in China.
Infect Genet Evol. 2013 Dec;20:298-303. doi: 10.1016/j.meegid.2013.09.004. Epub 2013 Sep 20. PubMed PMID: 24060734.
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Warren S, Wan XF, Conant G, Korkin D.
Extreme Evolutionary Conservation of Functionally Important Regions in H1N1 Influenza Proteome.
PLoS One. 2013;8(11):e81027. doi: 10.1371/journal.pone.0081027. eCollection 2013. PubMed PMID: 24282564; PubMed Central PMCID: PMC3839886.
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Ye J, Xu Y, Harris J, Sun H, Bowman AS, Cunningham F, Cardona C, Yoon KJ, Slemons RD, Wan XF.
Mutation From Arginine to Lysine at the Position 189 of Hemagglutinin Contributes to the Antigenic Drift in H3N2 Swine Influenza Viruses.
Virology. 2013 Nov;446(1-2):225-9. doi: 10.1016/j.virol.2013.08.004. Epub 2013 Sep 4. PubMed PMID: 24074585; PubMed Central PMCID: PMC4161209.
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Yang J, Li J, Grünewald S, Wan XF.
BinAligner: A Heuristic Method to Align Biological Networks.
BMC Bioinformatics. 2013;14 Suppl 14:S8. doi: 10.1186/1471-2105-14-S14-S8. Epub 2013 Oct 9. PubMed PMID: 24266981; PubMed Central PMCID: PMC3851320.
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Wan H, Gao J, Xu K, Chen H, Couzens LK, Rivers KH, Easterbrook JD, Yang K, Zhong L, Rajabi M, Ye J, Sultana I, Wan XF, Liu X, Perez DR, Taubenberger JK, Eichelberger MC.
Molecular Basis for Broad Neuraminidase Immunity: Conserved Epitopes in Seasonal and Pandemic H1N1 as Well as H5N1 Influenza Viruses.
J Virol. 2013 Aug;87(16):9290-300. doi: 10.1128/JVI.01203-13. Epub 2013 Jun 19. PubMed PMID: 23785204; PubMed Central PMCID: PMC3754050.
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Yuan XT, Zhang T, Wan XF.
A Joint Matrix Completion and Filtering Model for Influenza Serological Data Integration.
PLoS One. 2013;8(7):e69842. doi: 10.1371/journal.pone.0069842. Print 2013. PubMed PMID: 23936111; PubMed Central PMCID: PMC3723738.
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Sun H, Yang J, Zhang T, Long LP, Jia K, Yang G, Webby RJ, Wan XF.
Using Sequence Data to Infer the Antigenicity of Influenza Virus.
mBio. 2013 Jul 2;4(4). doi: 10.1128/mBio.00230-13. PubMed PMID: 23820391; PubMed Central PMCID: PMC3705446.
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Feng Z, Gomez J, Bowman AS, Ye J, Long LP, Nelson SW, Yang J, Martin B, Jia K, Nolting JM, Cunningham F, Cardona C, Zhang J, Yoon KJ, Slemons RD, Wan XF.
Antigenic Characterization of H3N2 Influenza A Viruses From Ohio Agricultural Fairs.
J Virol. 2013 Jul;87(13):7655-67. doi: 10.1128/JVI.00804-13. Epub 2013 May 1. PubMed PMID: 23637412; PubMed Central PMCID: PMC3700273.
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Wan XF, Barnett JL, Cunningham F, Chen S, Yang G, Nash S, Long LP, Ford L, Blackmon S, Zhang Y, Hanson L, He Q.
Detection of African Swine Fever Virus-Like Sequences in Ponds in the Mississippi Delta Through Metagenomic Sequencing.
Virus Genes. 2013 Jun;46(3):441-6. doi: 10.1007/s11262-013-0878-2. Epub 2013 Jan 22. PubMed PMID: 23338931; PubMed Central PMCID: PMC5413091.
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Yang J, Grünewald S, Wan XF.
Quartet-net: A Quartet-Based Method to Reconstruct Phylogenetic Networks.
Mol Biol Evol. 2013 May;30(5):1206-17. doi: 10.1093/molbev/mst040. Epub 2013 Mar 14. PubMed PMID: 23493256; PubMed Central PMCID: PMC3670728.
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Mummert A, Weiss H, Long LP, Amigó JM, Wan XF.
A Perspective on Multiple Waves of Influenza Pandemics.
PLoS One. 2013;8(4):e60343. doi: 10.1371/journal.pone.0060343. Print 2013. PubMed PMID: 23637746; PubMed Central PMCID: PMC3634039.
2012
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Beato MS, Mancin M, Yang J, Buratin A, Ruffa M, Maniero S, Fusaro A, Terregino C, Wan XF, Capua I.
Antigenic Characterization of Recent H5N1 Highly Pathogenic Avian Influenza Viruses Circulating in Egyptian Poultry.
Virology. 2013 Jan 20;435(2):350-6. doi: 10.1016/j.virol.2012.09.016. Epub 2012 Nov 2. PubMed PMID: 23123011; PubMed Central PMCID: PMC4223090.
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Cai Z, Ducatez MF, Yang J, Zhang T, Long LP, Boon AC, Webby RJ, Wan XF.
Identifying Antigenicity-Associated Sites in Highly Pathogenic H5N1 Influenza Virus Hemagglutinin by Using Sparse Learning.
J Mol Biol. 2012 Sep 7;422(1):145-55. doi: 10.1016/j.jmb.2012.05.011. Epub 2012 May 17. PubMed PMID: 22609437; PubMed Central PMCID: PMC3412944.
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Wan XF.
Lessons From Emergence of A/goose/Guangdong/1996-like H5N1 Highly Pathogenic Avian Influenza Viruses and Recent Influenza Surveillance Efforts in Southern China.
Zoonoses Public Health. 2012 Sep;59 Suppl 2:32-42. doi: 10.1111/j.1863-2378.2012.01497.x. Review. PubMed PMID: 22958248; PubMed Central PMCID: PMC4119829.
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Carrel MA, Emch M, Nguyen T, Todd Jobe R, Wan XF.
Population-environment Drivers of H5N1 Avian Influenza Molecular Change in Vietnam.
Health Place. 2012 Sep;18(5):1122-31. doi: 10.1016/j.healthplace.2012.04.009. Epub 2012 May 17. PubMed PMID: 22652510; PubMed Central PMCID: PMC3904498.
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Zhou F, Wang G, Buchy P, Cai Z, Chen H, Chen Z, Cheng G, Wan XF, Deubel V, Zhou P.
A Triclade DNA Vaccine Designed on the Basis of a Comprehensive Serologic Study Elicits Neutralizing Antibody Responses Against All Clades and Subclades of Highly Pathogenic Avian Influenza H5N1 Viruses.
J Virol. 2012 Jun;86(12):6970-8. doi: 10.1128/JVI.06930-11. Epub 2012 Apr 11. PubMed PMID: 22496212; PubMed Central PMCID: PMC3393539.
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Barnett JL, Yang J, Cai Z, Zhang T, Wan XF.
AntigenMap 3D: An Online Antigenic Cartography Resource.
Bioinformatics. 2012 May 1;28(9):1292-3. doi: 10.1093/bioinformatics/bts105. Epub 2012 Mar 6. PubMed PMID: 22399675; PubMed Central PMCID: PMC3338011.
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Xuan P, Zhang Y, Tzeng TR, Wan XF, Luo F.
A Quantitative Structure-Activity Relationship (QSAR) Study on Glycan Array Data to Determine the Specificities of Glycan-Binding Proteins.
Glycobiology. 2012 Apr;22(4):552-60. doi: 10.1093/glycob/cwr163. Epub 2011 Dec 7. PubMed PMID: 22156918; PubMed Central PMCID: PMC3409798.
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Carrel M, Wan XF, Nguyen T, Emch M.
Highly Pathogenic H5N1 Avian Influenza Viruses Exhibit Few Barriers to Gene Flow in Vietnam.
Ecohealth. 2012 Mar;9(1):60-9. doi: 10.1007/s10393-012-0749-7. Epub 2012 Feb 14. PubMed PMID: 22350419; PubMed Central PMCID: PMC3771539.
2011
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Cai Z, Zhang T, Wan XF.
Antigenic Distance Measurements for Seasonal Influenza Vaccine Selection.
Vaccine. 2012 Jan 5;30(2):448-53. doi: 10.1016/j.vaccine.2011.10.051. Epub 2011 Nov 7. PubMed PMID: 22063385; PubMed Central PMCID: PMC3246038.
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Carrel M, Wan XF, Nguyen T, Emch M.
Genetic Variation of Highly Pathogenic H5N1 Avian Influenza Viruses in Vietnam Shows Both Species-Specific and Spatiotemporal Associations.
Avian Dis. 2011 Dec;55(4):659-66. doi: 10.1637/9785-051811-Reg.1. PubMed PMID: 22312987; PubMed Central PMCID: PMC3841065.
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Wan XF, Dong L, Lan Y, Long LP, Xu C, Zou S, Li Z, Wen L, Cai Z, Wang W, Li X, Yuan F, Sui H, Zhang Y, Dong J, Sun S, Gao Y, Wang M, Bai T, Yang L, Li D, Yang W, Yu H, Wang S, Feng Z, Wang Y, Guo Y, Webby RJ, Shu Y.
Indications That Live Poultry Markets Are a Major Source of Human H5N1 Influenza Virus Infection in China.
J Virol. 2011 Dec;85(24):13432-8. doi: 10.1128/JVI.05266-11. Epub 2011 Oct 5. PubMed PMID: 21976646; PubMed Central PMCID: PMC3233185.
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Ducatez MF, Cai Z, Peiris M, Guan Y, Ye Z, Wan XF, Webby RJ.
Extent of Antigenic Cross-Reactivity Among Highly Pathogenic H5N1 Influenza Viruses.
J Clin Microbiol. 2011 Oct;49(10):3531-6. doi: 10.1128/JCM.01279-11. Epub 2011 Aug 10. PubMed PMID: 21832017; PubMed Central PMCID: PMC3187336.
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Zhang G, Kong W, Qi W, Long LP, Cao Z, Huang L, Qi H, Cao N, Wang W, Zhao F, Ning Z, Liao M, Wan XF.
Identification of an H6N6 Swine Influenza Virus in Southern China.
Infect Genet Evol. 2011 Jul;11(5):1174-7. doi: 10.1016/j.meegid.2011.02.023. Epub 2011 Mar 5. PubMed PMID: 21382518; PubMed Central PMCID: PMC3104128.
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Henne KL, Wan XF, Wei W, Thompson DK.
SO2426 Is a Positive Regulator of Siderophore Expression in Shewanella Oneidensis MR-1.
BMC Microbiol. 2011 May 31;11:125. doi: 10.1186/1471-2180-11-125. PubMed PMID: 21624143; PubMed Central PMCID: PMC3127752.
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Cai Z, Duan Y, Li Y, Lin G, Ozden M, Wan XF.
IPMiner: A Progenitor Gene Identifier for Influenza A Virus.
Influenza Other Respir Viruses. 2011 May;5 Suppl 1:413-5. PubMed PMID: 21761594; PubMed Central PMCID: PMC3208347.
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Cai Z, Zhang T, Wan XF.
Concepts and Applications for Influenza Antigenic Cartography.
Influenza Other Respir Viruses. 2011 May;5(Suppl 1):204-7. PubMed PMID: 21761589; PubMed Central PMCID: PMC3208348.
-
Long LP, Yuan C, Cai Z, Xu H, Wan XF.
Mixture Model Analysis Reflecting Dynamics of the Population Diversity of 2009 Pandemic H1N1 Influenza Virus.
In Silico Biol. 2011-2012;11(5-6):225-36. doi: 10.3233/ISB-2012-0457. PubMed PMID: 23202424; PubMed Central PMCID: PMC4710479.
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Yan L, Zhang S, Pace L, Wilson F, Wan H, Zhang M.
Combination of Reverse Transcription Real-Time Polymerase Chain Reaction and Antigen Capture Enzyme-Linked Immunosorbent Assay for the Detection of Animals Persistently Infected With Bovine Viral Diarrhea Virus.
J Vet Diagn Invest. 2011 Jan;23(1):16-25. doi: 10.1177/104063871102300103. PubMed PMID: 21217023.
2010
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Li S, Shi Z, Jiao P, Zhang G, Zhong Z, Tian W, Long LP, Cai Z, Zhu X, Liao M, Wan XF.
Avian-origin H3N2 Canine Influenza A Viruses in Southern China.
Infect Genet Evol. 2010 Dec;10(8):1286-8. doi: 10.1016/j.meegid.2010.08.010. Epub 2010 Aug 21. PubMed PMID: 20732458; PubMed Central PMCID: PMC2950248.
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Cai Z, Zhang T, Wan XF.
A Computational Framework for Influenza Antigenic Cartography.
PLoS Comput Biol. 2010 Oct 7;6(10):e1000949. doi: 10.1371/journal.pcbi.1000949. PubMed PMID: 20949097; PubMed Central PMCID: PMC2951339.
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Wan XF, Branton SL, Collier SD, Evans JD, Leigh SA, Pharr GT.
Proteomics Inference of Genes Involved in Host Adaptation of Mycoplasma Gallinarum.
Vet Microbiol. 2010 Sep 28;145(1-2):177-84. doi: 10.1016/j.vetmic.2010.03.007. Epub 2010 Mar 17. PubMed PMID: 20378283.
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Carrel MA, Emch M, Jobe RT, Moody A, Wan XF.
Spatiotemporal Structure of Molecular Evolution of H5N1 Highly Pathogenic Avian Influenza Viruses in Vietnam.
PLoS One. 2010 Jan 8;5(1):e8631. doi: 10.1371/journal.pone.0008631. PubMed PMID: 20072619; PubMed Central PMCID: PMC2799669.
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Jang Y, Wan XF.
Development of Chemical Bond Based Elastic Network Model and Its Application in Identifying Functional Motions in H5N1 Highly Pathogenic Avian Influenza Viruses.
Int J Bioinform Res Appl. 2010;6(1):1-11. doi: 10.1504/IJBRA.2010.031288. PubMed PMID: 20110205.
2009
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Nguyen T, Davis CT, Stembridge W, Shu B, Balish A, Inui K, Do HT, Ngo HT, Wan XF, McCarron M, Lindstrom SE, Cox NJ, Nguyen CV, Klimov AI, Donis RO.
Characterization of a Highly Pathogenic Avian Influenza H5N1 Virus Sublineage in Poultry Seized at Ports of Entry Into Vietnam.
Virology. 2009 May 10;387(2):250-6. doi: 10.1016/j.virol.2009.03.006. Epub 2009 Apr 2. PubMed PMID: 19342072.
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Luo F, Li B, Wan XF, Scheuermann RH.
Core and Periphery Structures in Protein Interaction Networks.
BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S8. doi: 10.1186/1471-2105-10-S4-S8. PubMed PMID: 19426456; PubMed Central PMCID: PMC2681073.
2008
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Wan XF, Nguyen T, Davis CT, Smith CB, Zhao ZM, Carrel M, Inui K, Do HT, Mai DT, Jadhao S, Balish A, Shu B, Luo F, Emch M, Matsuoka Y, Lindstrom SE, Cox NJ, Nguyen CV, Klimov A, Donis RO.
Evolution of Highly Pathogenic H5N1 Avian Influenza Viruses in Vietnam Between 2001 and 2007.
PLoS One. 2008;3(10):e3462. doi: 10.1371/journal.pone.0003462. Epub 2008 Oct 21. PubMed PMID: 18941631; PubMed Central PMCID: PMC2565130.
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Wan XF, Ozden M, Lin G.
Ubiquitous Reassortments in Influenza A Viruses.
J Bioinform Comput Biol. 2008 Oct;6(5):981-99. doi: 10.1142/s0219720008003813. PubMed PMID: 18942162.
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Zhao ZM, Shortridge KF, Garcia M, Guan Y, Wan XF.
Genotypic Diversity of H5N1 Highly Pathogenic Avian Influenza Viruses.
J Gen Virol. 2008 Sep;89(Pt 9):2182-2193. doi: 10.1099/vir.0.2008/001875-0. PubMed PMID: 18753228.
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Chourey K, Wei W, Wan XF, Thompson DK.
Transcriptome Analysis Reveals Response Regulator SO2426-mediated Gene Expression in Shewanella Oneidensis MR-1 Under Chromate Challenge.
BMC Genomics. 2008 Aug 21;9:395. doi: 10.1186/1471-2164-9-395. PubMed PMID: 18718017; PubMed Central PMCID: PMC2535785.
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Gao H, Pattison D, Yan T, Klingeman DM, Wang X, Petrosino J, Hemphill L, Wan X, Leaphart AB, Weinstock GM, Palzkill T, Zhou J.
Generation and Validation of a Shewanella Oneidensis MR-1 Clone Set for Protein Expression and Phage Display.
PLoS One. 2008 Aug 20;3(8):e2983. doi: 10.1371/journal.pone.0002983. PubMed PMID: 18714347; PubMed Central PMCID: PMC2500165.
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Lin G, Cai Z, Wu J, Wan XF, Xu L, Goebel R.
Identifying a Few Foot-And-Mouth Disease Virus Signature Nucleotide Strings for Computational Genotyping.
BMC Bioinformatics. 2008 Jun 13;9:279. doi: 10.1186/1471-2105-9-279. PubMed PMID: 18554404; PubMed Central PMCID: PMC2438327.
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Salem TZ, Turney CM, Wang L, Xue J, Wan XF, Cheng XW.
Transcriptional Analysis of a Major Capsid Protein Gene From Spodoptera Exigua Ascovirus 5a.
Arch Virol. 2008;153(1):149-62. doi: 10.1007/s00705-007-1081-3. Epub 2007 Nov 5. PubMed PMID: 17978884.
2007
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Wan XF, Chen G, Luo F, Emch M, Donis R.
A Quantitative Genotype Algorithm Reflecting H5N1 Avian Influenza Niches.
Bioinformatics. 2007 Sep 15;23(18):2368-75. doi: 10.1093/bioinformatics/btm354. Epub 2007 Jul 10. PubMed PMID: 17623701.
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Wu X, Cai Z, Wan XF, Hoang T, Goebel R, Lin G.
Nucleotide Composition String Selection in HIV-1 Subtyping Using Whole Genomes.
Bioinformatics. 2007 Jul 15;23(14):1744-52. doi: 10.1093/bioinformatics/btm248. Epub 2007 May 11. PubMed PMID: 17495995.
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Angellotti MC, Bhuiyan SB, Chen G, Wan XF.
CodonO: Codon Usage Bias Analysis Within and Across Genomes.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W132-6. doi: 10.1093/nar/gkm392. Epub 2007 May 30. PubMed PMID: 17537810; PubMed Central PMCID: PMC1933134.
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Kang CH, Nam YD, Chung WH, Quan ZX, Park YH, Park SJ, Desmone R, Wan XF, Rhee SK.
Relationship Between Genome Similarity and DNA-DNA Hybridization Among Closely Related Bacteria.
J Microbiol Biotechnol. 2007 Jun;17(6):945-51. PubMed PMID: 18050912.
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Song Z, Chen L, Ganapathy A, Wan XF, Brechenmacher L, Tao N, Emerich D, Stacey G, Xu D.
Development and Assessment of Scoring Functions for Protein Identification Using PMF Data.
Electrophoresis. 2007 Mar;28(5):864-70. doi: 10.1002/elps.200600305. PubMed PMID: 17265538.
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Wan XF, Wu X, Lin G, Holton SB, Desmone RA, Shyu CR, Guan Y, Emch ME.
Computational Identification of Reassortments in Avian Influenza Viruses.
Avian Dis. 2007 Mar;51(1 Suppl):434-9. doi: 10.1637/7625-042706R1.1. PubMed PMID: 17494602.
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Cheng X, Wan X, Xue J, Moore RC.
Ascovirus and its evolution.
Virol. Sin.. 2007; 22(2):137-147.
2006
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Wan XF, Lin G, Xu D.
Rnall: An Efficient Algorithm for Predicting RNA Local Secondary Structural Landscape in Genomes.
J Bioinform Comput Biol. 2006 Oct;4(5):1015-31. doi: 10.1142/s0219720006002363. PubMed PMID: 17099939.
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Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan XF, Hazen TC, Arkin AP, Wall JD, Zhou JZ, Fields MW.
Temporal Transcriptomic Analysis as Desulfovibrio Vulgaris Hildenborough Transitions Into Stationary Phase During Electron Donor Depletion.
Appl Environ Microbiol. 2006 Aug;72(8):5578-88. doi: 10.1128/AEM.00284-06. PubMed PMID: 16885312; PubMed Central PMCID: PMC1538716.
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Shababi M, Bourque J, Palanichelvam K, Cole A, Xu D, Wan XF, Schoelz J.
The Ribosomal Shunt Translation Strategy of Cauliflower Mosaic Virus Has Evolved From Ancient Long Terminal Repeats.
J Virol. 2006 Apr;80(8):3811-22. doi: 10.1128/JVI.80.8.3811-3822.2006. PubMed PMID: 16571798; PubMed Central PMCID: PMC1440423.
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Leaphart AB, Thompson DK, Huang K, Alm E, Wan XF, Arkin A, Brown SD, Wu L, Yan T, Liu X, Wickham GS, Zhou J.
Transcriptome Profiling of Shewanella Oneidensis Gene Expression Following Exposure to Acidic and Alkaline pH.
J Bacteriol. 2006 Feb;188(4):1633-42. doi: 10.1128/JB.188.4.1633-1642.2006. PubMed PMID: 16452448; PubMed Central PMCID: PMC1367224.
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Wan X, Xu D, Zhou J.
CodonO: a new informatics method for measuring synonymous codon usage bias within and across genomes.
International Journal of General Systems. 2006; 35(1):109-125.
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Wu X, Wan XF, Wu G, Xu D, Lin G.
Phylogenetic Analysis Using Complete Signature Information of Whole Genomes and Clustered Neighbour-Joining Method.
Int J Bioinform Res Appl. 2006;2(3):219-48. doi: 10.1504/IJBRA.2006.010602. PubMed PMID: 18048163.
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Wu X, Goebel R, Wan XF, Lin G.
Whole Genome Composition Distance for HIV-1 Genotyping.
Comput Syst Bioinformatics Conf. 2006;:179-90. PubMed PMID: 17369636.
Before 2005
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Wan XF, Xu D.
Computational Methods for Remote Homolog Identification.
Curr Protein Pept Sci. 2005 Dec;6(6):527-46. doi: 10.2174/138920305774933231. Review. PubMed PMID: 16381602.
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Chung WH, Rhee SK, Wan XF, Bae JW, Quan ZX, Park YH.
Design of Long Oligonucleotide Probes for Functional Gene Detection in a Microbial Community.
Bioinformatics. 2005 Nov 15;21(22):4092-100. doi: 10.1093/bioinformatics/bti673. Epub 2005 Sep 13. PubMed PMID: 16159916.
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Wan XF, Ren T, Luo KJ, Liao M, Zhang GH, Chen JD, Cao WS, Li Y, Jin NY, Xu D, Xin CA.
Genetic Characterization of H5N1 Avian Influenza Viruses Isolated in Southern China During the 2003-04 Avian Influenza Outbreaks.
Arch Virol. 2005 Jun;150(6):1257-66. doi: 10.1007/s00705-004-0474-9. Epub 2005 Feb 18. PubMed PMID: 15717120.
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Wan X, Xu D.
Intrinsic Terminator Prediction and Its Application in Synechococcus sp.
WH8102. Journal of Computer Science and Technology. 2005; 20(4):465-482.
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Wan XF, Verberkmoes NC, McCue LA, Stanek D, Connelly H, Hauser LJ, Wu L, Liu X, Yan T, Leaphart A, Hettich RL, Zhou J, Thompson DK.
Transcriptomic and Proteomic Characterization of the Fur Modulon in the Metal-Reducing Bacterium Shewanella Oneidensis.
J Bacteriol. 2004 Dec;186(24):8385-400. doi: 10.1128/JB.186.24.8385-8400.2004. PubMed PMID: 15576789; PubMed Central PMCID: PMC532403.
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Wan XF, Bridges SM, Boyle JA.
Revealing Gene Transcription and Translation Initiation Patterns in Archaea, Using an Interactive Clustering Model.
Extremophiles. 2004 Aug;8(4):291-9. doi: 10.1007/s00792-004-0388-1. Epub 2004 May 19. PubMed PMID: 15150699.
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Rhee SK, Liu X, Wu L, Chong SC, Wan X, Zhou J.
Detection of Genes Involved in Biodegradation and Biotransformation in Microbial Communities by Using 50-mer Oligonucleotide Microarrays
Appl Environ Microbiol. 2004 Jul;70(7):4303-17. doi: 10.1128/AEM.70.7.4303-4317.2004. PubMed PMID: 15240314; PubMed Central PMCID: PMC444823.
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Wan XF, Xu D, Kleinhofs A, Zhou J.
Quantitative Relationship Between Synonymous Codon Usage Bias and GC Composition Across Unicellular Genomes.
BMC Evol Biol. 2004 Jun 28;4:19. doi: 10.1186/1471-2148-4-19. PubMed PMID: 15222899; PubMed Central PMCID: PMC476735.
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Ganapathy A, Wan XF, Wan J, Thelen J, Emerich DW, Stacey G, Xu D.
Statistical Assessment for Mass-Spec Protein Identification Using Peptide Fingerprinting Approach.
Conf Proc IEEE Eng Med Biol Soc. 2004;2004:3051-4. doi: 10.1109/IEMBS.2004.1403863. PubMed PMID: 17270922.
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Wan X, Branton SL, Hanson LA, Pharr GT.
Identification and Initial Characterization of a Putative Mycoplasma Gallinarum Leucine Aminopeptidase Gene.
Curr Microbiol. 2004 Jan;48(1):32-8. doi: 10.1007/s00284-003-4098-1. PubMed PMID: 15018100.
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Wan X, Branton SL, Hughlett MB, Hanson LA, Pharr GT.
Expression and Subcellular Location of a Leucine Aminopeptidase of Mycoplasma Gallinarum.
International journal of poultry science. 2004; 3(1):70-74.
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Pharr GT, Branton SL, Hanson LA, Minion FC, Hughlett MB, Wan X.
Characterization of pMGA Genes from the F - Strain (Vaccine Strain) of Mycoplasma Gallisepticum.
International Journal of Poultry Science. 2002; 1(4):63-73.
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Guo Y, Wang M, Xu X, Wan X, Guo J, Dong J, Zhang Y.
Nucleotide sequence of A/Goose/Guangdong/2/96(H5N1) virus M and NS RNA.
Chinese Journal of Experimental and Clinical Virology. 1999; 13(4):305-309.
-
Guo Y, Xu X, Wan X.
[Genetic Characterization of an Avian Influenza A (H5N1) Virus Isolated From a Sick Goose in China].
Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi. 1998 Dec;12(4):322-5. PubMed PMID: 12526344.
-
Wan X, Xin C.
Prevention and control of Avian Influenza. Journal of Poultry Husbandry and Diseases Control.
1998; 6:5-6.
-
Hu M, Wan X.
Current status of sturgeon aquaculture. Freshwater Fisheries.
1996; 26(5):28-30.
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Xin C, Liao M, Huang G, Wan X.
Avian Influenza.
Journal of Poultry Husbandry and Diseases Control. 1996; 12:4-5.
-
Xin C, Liao M, Huang G, Wan X.
Fluoride and soft leg symptom in poultry.
Journal of Poultry Husbandry and Diseases Control. 1995; 12:3-4.
Referred Conference Proceedings
- Jiacheng Xie, Ziyang Zhang, Joel Hilliard, Guanghui An, Xiaoting Tang, Yang Yu, Xiu-Feng Wan, and Dong Xu. 2023. An Online Tool for Understanding and Monitoring COVID-19 Trends and Spread Based on Self-Reporting Tweets. IEEE International Conference on Medical Artificial Intelligence (MedAI), 55-60.
- Sura A. Muhsin, Ying He, Muthana Al-Amidie, Karen Sergovia, Amjed Abdullah, Yang Wang, Omar Alkorjia, R. A. Hulsey, G. L. Hunter, Z. Erdal, R. J. Pletka, G. S. Hyleme, Xiu-Feng Wan, and Mahmoud Almasri. A Microfluidic Biosensor Architecture for Rapid Detection of COVID-19. 2023 IEEE 36th International Conference on Micro Electro Mechanical Systems (MEMS), 433-436.
- Han, L., Y. Zhang, X.-F. Wan, and T. Zhang. Generalized hierarchical square model for arbitrary-order interactive antigenic sites identification in influenza virus data. Proceeding KDD ‘16 Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Pages 865-874.
- Grindinger, T., F. Luo, X.-F. Wan, and R. H. Scheuermann. 2008. Exploring Core/periphery structures in protein interaction networks provides structure-property relation insights. The 8th IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Philadelphia, PA, November, 2008. Pages 179-186.
- Wu, X., R. G. Goebel, X.-F. Wan and G. Lin. 2006. Weighted Composition Distance for HIV Genotyping. In Proceedings of the 2006 Computational Systems Bioinformatics Conference. Stanford, California, 14-18 August 2006. Pages 179-190.
- X. Wu, X.-F. Wan, D. Xu, and G. Lin. Whole Genome Phylogeny Based on Clustered Signature String Composition. 2005. In Posters in 2005 IEEE Computational Systems Bioinformatics Conference (CSB 2005). Stanford University, California. August 8-11, pp. 53-54.
- Ganapathy, A., X.-F. Wan, B. D. Gue, J. Wan, J. Thelen, D. W. Emerich, G. Stacey and D. Xu. 2004. Statistical assessment for Mass-spec protein identification using peptide fingerprinting approach. In Proceedings of the 26th Annual International Conference IEEE Engineering in Medicine and Biology Society (EMBS'04), Bioinformatics and Computational Biology, San Francisco, CA, pp. 3051-3054.
- Wan, X., D. Xu, and J. Zhou. 2003. A new informatics method measuring synonymous codon usage bias. In Intelligent engineering systems through artificial neural networks, vol 13, eds. Dagli et al., 1101-1018. New York, NY: ASME Press.
- Wan, X., S. M. Bridges, J. A. Boyle, and A. P. Boyle. 2002. Interactive clustering for exploration of genomic data. In Intelligent engineering systems through artificial neural networks, vol 12, eds. Dagli et al., 753-758. New York, NY: ASME Press.
Book Chapters
- Tang CY, Kumar A, Wan XF. 2024. Avian and Swine Influenza. In Molecular Medical Microbiology, edited by Yi-Wei Tang, Musa Hindiyeh, Dongyou Liu, Andrew Sails, Paul Spearman, and Jingren Zhang, Elsevier Academic Press, pp. 2375-2411.
- Wan, X.-F., M. Emch, and Z.-M. Zhao. 2009. Advances in molecular evolution of influenza A viruses. In Global View at Fight against Influenza, edited by Mitrasinovic, Chapter 4, pp. 31-48, Nova Publisher, Inc.
- Wan, X.-F. and D. K. Thompson. 2009. High-throughput technologies and functional genomics. In Systems biology and synthetic biology, edited by Fu, Chapter 3, pp. 63-112, John Wiley & Son, Inc.
- Wan, X.-F., D. Ataman, and D. Xu. 2005. Application of computational biology in understanding emerging infectious diseases: inferring the biological function for S-M complex of SARS-CoV. In Progress in Bioinformatics, pp. 55-80, Nova Publisher, Inc.
- Xu, D., O. Duzlevski, and X.-F. Wan. 2005. In search of remote homolog. In Handbook of Computational Molecular Biology, edited by Aluru, Chapter 33, pp.1-27, CRC Press.